Basic Information
Gene Model:Bol005122
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C04
Scaffold:Scaffold000307
Sequence:
 | 
Gene Structure
Nucleotide Length:2378 bp
Transcript Length:1167 bp
Protein Length:388 aa
Strand:+
Location:C04: 39006665 : 39009042
Gene CDSs(5): 1-393 | 681-932 | 1351-1449 | 1534-1809 | 2232-2378 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52821Rhodanese/Cell cycle 210 338 2.9e-19IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 244 367 13.522IPR001763Rhodanese-like
Segsegseg 339 346 NANot foundNot found
Segsegseg 20 42 NANot foundNot found
Segsegseg 51 68 NANot foundNot found
Segsegseg 297 312 NANot foundNot found
HMMSmartSM00450no description 234 364 8e-11IPR001763Rhodanese-like
HMMPantherPTHR18838RHODANESE-LIKE DOMAI 59 340 1.4e-53Not foundNot found
Gene3DG3DSA:3.40.250.10no description 210 340 3.3e-14IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8YZS31e-51Y384_ANASP UPF0176 protein all0384 OS=Anabaena sp. (strain PCC 7120) GN=all0384 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q1JPN01e-149Q1JPN0_ARATH At2g40760 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ota:Ot14g028802e-14K10838XPCxeroderma pigmentosum group C-complementing protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9635(8 genes,8 taxa):Arabidopsis thalianaAT2G40760.1
ORTHOMCL9635(8 genes,8 taxa):Brassica oleraceaBol005122
ORTHOMCL9635(8 genes,8 taxa):Brassica rapaBra016973
ORTHOMCL9635(8 genes,8 taxa):Vitis viniferaGSVIVT01032660001
ORTHOMCL9635(8 genes,8 taxa):Oryza sativaOs05t0323100-01
ORTHOMCL9635(8 genes,8 taxa):Populus trichocarpaPOPTR_0019s08750.1
ORTHOMCL9635(8 genes,8 taxa):Sorghum bicolorSb09g011890.1
ORTHOMCL9635(8 genes,8 taxa):Carica papayaevm.TU.supercontig_19.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38913855..39428485 (+)B.rapaA09:12270082..12793029 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G407601701004817012067Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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