Basic Information
Gene Model:Bol005080
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000308
Sequence:
 | 
Gene Structure
Nucleotide Length:4146 bp
Transcript Length:2157 bp
Protein Length:718 aa
Strand:+
Location:C05: 28778329 : 28782474
Gene CDSs(16): 1-132 | 213-369 | 447-580 | 1021-1153 | 1238-1509 | 1585-1874 | 2124-2452 | 2525-2587 | 2670-2735 | 2822-2893 | 2975-3043 | 3132-3203 | 3293-3358 | 3461-3532 | 3636-3768 | 4050-4146 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 77 598 1.7e-230Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 77 598 1.7e-230Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 420 694 35.835IPR000719Protein kinase, catalytic domain
Segsegseg 687 698 NANot foundNot found
Segsegseg 314 325 NANot foundNot found
Segsegseg 399 410 NANot foundNot found
Segsegseg 245 264 NANot foundNot found
Segsegseg 266 304 NANot foundNot found
Segsegseg 79 89 NANot foundNot found
Segsegseg 101 112 NANot foundNot found
HMMSmartSM00219no description 420 691 3.9e-16IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 420 693 2.4e-22IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 164 188 39IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 141 163 41IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 95 123 11IPR003591Leucine-rich repeat, typical subtype
HMMPfamPF00069Pkinase 420 634 2.7e-31IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 143 164 1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 166 188 0.016IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 97 116 1.7IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 119 141 0.98IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 29 70 3.3e-12IPR013210Leucine-rich repeat, N-terminal
superfamilySSF52058L domain-like 26 231 1.1e-38Not foundNot found
superfamilySSF56112Protein kinase-like 390 699 5.8e-71IPR011009Protein kinase-like domain
PatternScanPS00107PROTEIN_KINASE_ATP 426 449 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.10no description 500 702 3e-43Not foundNot found
Gene3DG3DSA:3.30.200.20no description 374 497 1.1e-17Not foundNot found
Gene3DG3DSA:3.80.10.10no description 26 256 4.5e-35Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LUL40.0SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1
TrEMBL
Best HitE_value Description
B5X5830.0B5X583_ARATH At3g14350 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4134528e-66K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G53730.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G78980.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13062.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13065.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT4G22130.1
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol005080
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010246
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010626
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol011822
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015780
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015781
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol028489
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035140
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035507
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol038497
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol039093
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra001486
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra013591
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra021551
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra027347
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra030923
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra034709
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra035080
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039367
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039687
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01004806001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01016654001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029461001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029462001
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0190500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0468400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0397700-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs06t0634500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs09t0559900-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs10t0389800-01
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0001s16170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0003s07130.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15160.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.2
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.3
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00330.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00340.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g024160.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g033190.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g045010.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g032710.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g039370.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g006110.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g017500.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb10g024830.1
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.11
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.7
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_152.50
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_229.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:28425446..30798882 (-)A.thalianaChr3:3617523..4902628 (+)200
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:28425446..29589734 (+)B.rapaA05:3800287..4380117 (+)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1435047827574787167Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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