Basic Information
Gene Model:Bol004999
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000309
Sequence:
 | 
Gene Structure
Nucleotide Length:7449 bp
Transcript Length:1386 bp
Protein Length:461 aa
Strand:+
Location:C07: 37898887 : 37906335
Gene CDSs(10): 1-285 | 4763-4830 | 5309-5337 | 5425-5621 | 5874-6095 | 6211-6351 | 6442-6558 | 6884-6937 | 7025-7141 | 7294-7449 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 202 216 NANot foundNot found
Segsegseg 160 181 NANot foundNot found
Segsegseg 142 158 NANot foundNot found
Segsegseg 38 50 NANot foundNot found
HMMPfamPF01699Na_Ca_ex 104 255 8.3e-24IPR004837Sodium/calcium exchanger membrane region
HMMPfamPF01699Na_Ca_ex 300 433 3.4e-33IPR004837Sodium/calcium exchanger membrane region
HMMTigrTIGR00378cax: calcium/proton 78 434 2e-96IPR004798Calcium/proton exchanger superfamily
HMMTigrTIGR00846caca2: calcium/proto 60 434 1.3e-220IPR004713Calcium/proton exchanger
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0008324 Molecular Function cation transmembrane transporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q93Z810.0CAX3_ARATH Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q3EBK60.0Q3EBK6_ARATH AT2G38170 protein OS=Arabidopsis thaliana GN=AT2G38170 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G381700.0K07300chaACa2+:H+ antiporter
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1751(16 genes,8 taxa):Arabidopsis thalianaAT2G38170.3
ORTHOMCL1751(16 genes,8 taxa):Arabidopsis thalianaAT3G51860.1
ORTHOMCL1751(16 genes,8 taxa):Brassica oleraceaBol004999
ORTHOMCL1751(16 genes,8 taxa):Brassica oleraceaBol017767
ORTHOMCL1751(16 genes,8 taxa):Brassica oleraceaBol025283
ORTHOMCL1751(16 genes,8 taxa):Brassica rapaBra005131
ORTHOMCL1751(16 genes,8 taxa):Brassica rapaBra012833
ORTHOMCL1751(16 genes,8 taxa):Brassica rapaBra017134
ORTHOMCL1751(16 genes,8 taxa):Vitis viniferaGSVIVT01033962001
ORTHOMCL1751(16 genes,8 taxa):Oryza sativaOs01t0557500-01
ORTHOMCL1751(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s10080.1
ORTHOMCL1751(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s12290.1
ORTHOMCL1751(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s12290.2
ORTHOMCL1751(16 genes,8 taxa):Populus trichocarpaPOPTR_0016s12290.3
ORTHOMCL1751(16 genes,8 taxa):Sorghum bicolorSb03g024820.1
ORTHOMCL1751(16 genes,8 taxa):Carica papayaevm.TU.supercontig_11.137
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37782784..38088822 (+)A.thalianaChr3:19110596..19467386 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37660530..38071753 (+)B.rapaA09:9754142..10434121 (+)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G518601923942719242913Chr3Subgenome_II49
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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