Basic Information
Gene Model:Bol004974
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000310
Sequence:
 | 
Gene Structure
Nucleotide Length:1412 bp
Transcript Length:870 bp
Protein Length:289 aa
Strand:-
Location:C04: 8666804 : 8668215
Gene CDSs(7): 1-107 | 204-253 | 352-390 | 483-511 | 603-665 | 752-852 | 932-1412 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05726Pirin_C 175 282 3.4e-45IPR008778Pirin, C-terminal
HMMPfamPF02678Pirin 27 122 3.6e-41IPR003829Pirin, N-terminal
superfamilySSF51182RmlC-like cupins 9 286 1.8e-75IPR011051Cupin, RmlC-type
HMMPantherPTHR13903PIRIN-RELATED 61 287 3e-89IPR012093Pirin
HMMPIRPIRSF006232Pirin 11 285 1.2e-97IPR012093Pirin
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9LX491e-134PRN1_ARATH Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q147N71e-133Q147N7_ARATH At3g59220 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G431201e-111K06911K06911--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15687(4 genes,3 taxa):Arabidopsis thalianaAT3G59220.1
ORTHOMCL15687(4 genes,3 taxa):Brassica oleraceaBol004974
ORTHOMCL15687(4 genes,3 taxa):Brassica oleraceaBol045557
ORTHOMCL15687(4 genes,3 taxa):Brassica rapaBra014547
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:8436626..9235863 (-)A.thalianaChr2:17627342..17968726 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:8470673..10010034 (+)B.rapaA09:12543831..13419898 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G592202189413421895623Chr3Subgenome_I132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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