Basic Information
Gene Model:Bol004903
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000311
Sequence:
 | 
Gene Structure
Nucleotide Length:1503 bp
Transcript Length:1239 bp
Protein Length:412 aa
Strand:+
Location:C04: 3454063 : 3455565
Gene CDSs(4): 1-792 | 882-1012 | 1106-1267 | 1350-1503 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 243 259 NANot foundNot found
Gene3DG3DSA:3.40.50.2300no description 27 167 2.5e-25Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 1 152 3e-14Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 1 152 3e-14Not foundNot found
HMMSmartSM00448no description 26 141 3.5e-24IPR001789Signal transduction response regulator, receiver region
HMMPfamPF06203CCT 363 407 1.1e-23IPR010402CCT domain
HMMPfamPF00072Response_reg 28 142 1.9e-22IPR001789Signal transduction response regulator, receiver region
ProfileScanPS51017CCT 363 405 15.626IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 27 145 28.398IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 26 152 6.3e-29IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8L5001e-166APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q56XM11e-165Q56XM1_ARATH Putative uncharacterized protein At2g46790 OS=Arabidopsis thaliana GN=At2g46790 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G467901e-166K12128APRR9pseudo-response regulator 9
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23604(2 genes,2 taxa):Brassica oleraceaBol004903
ORTHOMCL23604(2 genes,2 taxa):Brassica rapaBra004507
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3258141..3737325 (+)A.thalianaChr3:22895268..23089206 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G467901923264919235076Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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