Basic Information
Gene Model:Bol004897
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000311
Sequence:
 | 
Gene Structure
Nucleotide Length:894 bp
Transcript Length:894 bp
Protein Length:297 aa
Strand:+
Location:C04: 3476904 : 3477797
Gene CDSs(1): 1-894 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 11 33 NANot foundNot found
Segsegseg 248 257 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 23 154 4.4e-37Not foundNot found
Coilcoilcoiled-coil 3 34 NANot foundNot found
HMMPfamPF02362B3 35 144 1.2e-34IPR003340Transcriptional factor B3
ProfileScanPS50863B3 36 142 14.889IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O827991e-122NGA1_ARATH B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1
TrEMBL
Best HitE_value Description
C3VMM21e-120C3VMM2_ARATH NGATHA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002628432e-42K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1631(16 genes,8 taxa):Arabidopsis thalianaAT1G01030.1
ORTHOMCL1631(16 genes,8 taxa):Arabidopsis thalianaAT2G46870.1
ORTHOMCL1631(16 genes,8 taxa):Brassica oleraceaBol004897
ORTHOMCL1631(16 genes,8 taxa):Brassica oleraceaBol005654
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra000434
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra004501
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra030497
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra033294
ORTHOMCL1631(16 genes,8 taxa):Vitis viniferaGSVIVT01027463001
ORTHOMCL1631(16 genes,8 taxa):Oryza sativaOs03t0120900-01
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0002s18260.1
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.1
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.2
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.3
ORTHOMCL1631(16 genes,8 taxa):Sorghum bicolorSb01g049150.1
ORTHOMCL1631(16 genes,8 taxa):Carica papayaevm.TU.supercontig_57.70
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3258141..3737325 (+)A.thalianaChr3:22895268..23089206 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G468701926091819262404Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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