Basic Information
Gene Model:Bol004891
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000311
Sequence:
 | 
Gene Structure
Nucleotide Length:2771 bp
Transcript Length:2556 bp
Protein Length:851 aa
Strand:-
Location:C04: 3492531 : 3495301
Gene CDSs(4): 1-2025 | 2090-2203 | 2281-2545 | 2620-2771 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 263 832 4.3e-51IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 281 850 4.2e-146Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 281 850 4.2e-146IPR015655Protein phosphatase 2C
Gene3DG3DSA:3.60.40.10no description 290 834 1.3e-45IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 274 828 1.3e-79IPR001932Protein phosphatase 2C-related
Segsegseg 207 219 NANot foundNot found
Segsegseg 670 683 NANot foundNot found
Segsegseg 131 142 NANot foundNot found
HMMPfamPF00481PP2C 662 770 7.9e-21IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q8RWN70.0P2C32_ARATH Protein phosphatase 2C 32 OS=Arabidopsis thaliana GN=POL PE=1 SV=1
TrEMBL
Best HitE_value Description
C0Z2660.0C0Z266_ARATH AT2G46920 protein OS=Arabidopsis thaliana GN=AT2G46920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
hmg:1002132611e-18K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4764(11 genes,8 taxa):Arabidopsis thalianaAT2G46920.1
ORTHOMCL4764(11 genes,8 taxa):Brassica oleraceaBol004891
ORTHOMCL4764(11 genes,8 taxa):Brassica rapaBra004495
ORTHOMCL4764(11 genes,8 taxa):Vitis viniferaGSVIVT01028224001
ORTHOMCL4764(11 genes,8 taxa):Oryza sativaOs03t0372500-02
ORTHOMCL4764(11 genes,8 taxa):Oryza sativaOs03t0372500-03
ORTHOMCL4764(11 genes,8 taxa):Populus trichocarpaPOPTR_0002s18590.1
ORTHOMCL4764(11 genes,8 taxa):Populus trichocarpaPOPTR_0014s10610.1
ORTHOMCL4764(11 genes,8 taxa):Sorghum bicolorSb01g034260.1
ORTHOMCL4764(11 genes,8 taxa):Carica papayaevm.TU.contig_35224.1
ORTHOMCL4764(11 genes,8 taxa):Carica papayaevm.TU.supercontig_576.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3258141..3737325 (+)A.thalianaChr3:22895268..23089206 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G469201927790319281214Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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