Basic Information
Gene Model:Bol004790
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000314
Sequence:
 | 
Gene Structure
Nucleotide Length:2030 bp
Transcript Length:1287 bp
Protein Length:428 aa
Strand:-
Location:Scaffold000314: 138657 : 140686
Gene CDSs(9): 1-26 | 107-309 | 405-640 | 710-835 | 917-1024 | 1123-1186 | 1284-1437 | 1531-1702 | 1833-2030 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 62 261 6e-24IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 17 363 2.6e-237IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF25PROTEIN PHOSPHATASE, 17 363 2.6e-237Not foundNot found
superfamilySSF81606Protein serine/threo 7 293 2.8e-51IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 21 291 1.1e-55IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 26 293 0.0039IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 31 293 2.6e-47IPR001932Protein phosphatase 2C-related
Segsegseg 315 331 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9FX080.0P2C12_ARATH Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9MVN40.0B9MVN4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836440 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G260807e-20K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2360(14 genes,8 taxa):Arabidopsis thalianaAT1G47380.1
ORTHOMCL2360(14 genes,8 taxa):Brassica oleraceaBol004790
ORTHOMCL2360(14 genes,8 taxa):Brassica oleraceaBol045175
ORTHOMCL2360(14 genes,8 taxa):Brassica rapaBra014076
ORTHOMCL2360(14 genes,8 taxa):Brassica rapaBra015619
ORTHOMCL2360(14 genes,8 taxa):Brassica rapaBra032214
ORTHOMCL2360(14 genes,8 taxa):Vitis viniferaGSVIVT01009518001
ORTHOMCL2360(14 genes,8 taxa):Oryza sativaOs02t0567200-01
ORTHOMCL2360(14 genes,8 taxa):Oryza sativaOs03t0395100-01
ORTHOMCL2360(14 genes,8 taxa):Populus trichocarpaPOPTR_0002s12870.1
ORTHOMCL2360(14 genes,8 taxa):Populus trichocarpaPOPTR_0014s03110.1
ORTHOMCL2360(14 genes,8 taxa):Sorghum bicolorSb01g033320.1
ORTHOMCL2360(14 genes,8 taxa):Sorghum bicolorSb04g023510.1
ORTHOMCL2360(14 genes,8 taxa):Carica papayaevm.TU.supercontig_49.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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