Basic Information
Gene Model:Bol004607
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000318
Sequence:
 | 
Gene Structure
Nucleotide Length:3566 bp
Transcript Length:2343 bp
Protein Length:780 aa
Strand:-
Location:C03: 8112326 : 8115891
Gene CDSs(11): 1-557 | 628-806 | 879-928 | 1012-1371 | 1733-1809 | 1904-2078 | 2154-2250 | 2333-2868 | 2943-3044 | 3150-3231 | 3439-3566 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF07496zf-CW 539 584 1.3e-16IPR011124Zinc finger, CW-type
HMMPfamPF02362B3 291 394 1.4e-27IPR003340Transcriptional factor B3
Coilcoilcoiled-coil 690 711 NANot foundNot found
ProfileScanPS51050ZF_CW 535 585 13.466IPR011124Zinc finger, CW-type
ProfileScanPS50863B3 292 393 10.673IPR003340Transcriptional factor B3
Segsegseg 693 714 NANot foundNot found
Segsegseg 612 634 NANot foundNot found
Segsegseg 507 524 NANot foundNot found
HMMPantherPTHR23336ZINC FINGER CW-TYPE 541 568 0.00091Not foundNot found
HMMPantherPTHR23336:SF1SUBFAMILY NOT NAMED 541 568 0.00091Not foundNot found
Gene3DG3DSA:2.40.330.10no description 285 406 9.1e-34Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8W4L50.0VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9INL80.0B9INL8_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_914708 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G132602e-13K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1009(20 genes,8 taxa):Arabidopsis thalianaAT2G30470.1
ORTHOMCL1009(20 genes,8 taxa):Arabidopsis thalianaAT4G32010.1
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol004607
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol006705
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol033346
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol033759
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra018313
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra021635
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra022801
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra023968
ORTHOMCL1009(20 genes,8 taxa):Vitis viniferaGSVIVT01024559001
ORTHOMCL1009(20 genes,8 taxa):Vitis viniferaGSVIVT01030182001
ORTHOMCL1009(20 genes,8 taxa):Oryza sativaOs07t0679700-01
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0006s10880.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0013s15330.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0016s14350.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0019s15070.1
ORTHOMCL1009(20 genes,8 taxa):Sorghum bicolorSb02g043000.1
ORTHOMCL1009(20 genes,8 taxa):Carica papayaevm.TU.supercontig_0.83
ORTHOMCL1009(20 genes,8 taxa):Carica papayaevm.TU.supercontig_2.279
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8108679..8561618 (+)A.thalianaChr2:12936979..13523708 (+)46
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8108679..8505916 (+)B.rapaA05:14493608..15059904 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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