Basic Information
Gene Model:Bol004544
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000321
Sequence:
 | 
Gene Structure
Nucleotide Length:1363 bp
Transcript Length:1113 bp
Protein Length:370 aa
Strand:-
Location:Scaffold000321: 411214 : 412576
Gene CDSs(4): 1-329 | 425-509 | 585-717 | 798-1363 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 208 281 NANot foundNot found
HMMPfamPF07716bZIP_2 181 235 2.8e-06IPR011700Basic leucine zipper
Segsegseg 312 348 NANot foundNot found
Segsegseg 16 28 NANot foundNot found
Segsegseg 216 233 NANot foundNot found
ProfileScanPS50217BZIP 183 246 10.530IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMSmartSM00338no description 181 245 5.6e-15IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q040881e-150POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DGB11e-149B9DGB1_ARATH AT2G31370 protein OS=Arabidopsis thaliana GN=At2g31370 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002582053e-06K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15483(4 genes,3 taxa):Arabidopsis thalianaAT2G31370.3
ORTHOMCL15483(4 genes,3 taxa):Brassica oleraceaBol004544
ORTHOMCL15483(4 genes,3 taxa):Brassica rapaBra018250
ORTHOMCL15483(4 genes,3 taxa):Brassica rapaBra021735
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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