Basic Information
Gene Model:Bol004323
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000326
Sequence:
 | 
Gene Structure
Nucleotide Length:1427 bp
Transcript Length:873 bp
Protein Length:290 aa
Strand:-
Location:Scaffold000326: 66005 : 67431
Gene CDSs(5): 1-327 | 604-687 | 762-846 | 930-1156 | 1278-1427 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 235 280 NANot foundNot found
Segsegseg 106 115 NANot foundNot found
HMMSmartSM00526no description 121 186 3e-13IPR005818Histone H1/H5
HMMSmartSM00717no description 4 59 3.4e-07IPR001005SANT, DNA-binding
HMMPantherPTHR21717TELOMERIC REPEAT BIN 5 61 1.5e-06Not foundNot found
HMMPantherPTHR21717:SF9TELOMERIC REPEAT BIN 5 61 1.5e-06Not foundNot found
Gene3DG3DSA:1.10.10.10no description 118 202 2.9e-06IPR011991Winged helix repressor DNA-binding
Gene3DG3DSA:1.10.10.60no description 1 68 7.8e-14IPR012287Homeodomain-related
HMMPfamPF00538Linker_histone 120 191 0.00057IPR005818Histone H1/H5
HMMPfamPF00249Myb_DNA-binding 5 57 8.7e-08IPR014778Myb, DNA-binding
superfamilySSF46689Homeodomain-like 2 62 1.3e-08IPR009057Homeodomain-like
superfamilySSF46785"Winged helix" DNA-b 119 204 5.6e-17Not foundNot found
ProfileScanPS51294HTH_MYB 1 61 14.388IPR017930Myb-type HTH DNA-binding domain
Coilcoilcoiled-coil 236 274 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9FJW51e-104Q9FJW5_ARATH Similarity to MYB-like DNA-binding protein OS=Arabidopsis thaliana GN=TRB2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G498506e-75K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16002(4 genes,4 taxa):Arabidopsis thalianaAT5G67580.1
ORTHOMCL16002(4 genes,4 taxa):Brassica oleraceaBol004323
ORTHOMCL16002(4 genes,4 taxa):Brassica rapaBra024438
ORTHOMCL16002(4 genes,4 taxa):Carica papayaevm.TU.supercontig_6.10
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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