Basic Information
Gene Model:Bol004258
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000328
Sequence:
 | 
Gene Structure
Nucleotide Length:1702 bp
Transcript Length:1140 bp
Protein Length:379 aa
Strand:+
Location:Scaffold000328: 320118 : 321819
Gene CDSs(7): 1-179 | 269-331 | 419-535 | 613-862 | 994-1155 | 1249-1397 | 1483-1702 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 42 157 9.4e-07Not foundNot found
superfamilySSF103481Multidrug resistance 219 329 2.3e-10Not foundNot found
Segsegseg 305 318 NANot foundNot found
HMMPfamPF00892DUF6 194 323 6.2e-09IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 17 150 3.2e-15IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-565NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FNA50.0Q9FNA5_ARATH Similarity to MtN21 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14337(5 genes,5 taxa):Arabidopsis thalianaAT5G13670.1
ORTHOMCL14337(5 genes,5 taxa):Brassica oleraceaBol004258
ORTHOMCL14337(5 genes,5 taxa):Brassica rapaBra023428
ORTHOMCL14337(5 genes,5 taxa):Populus trichocarpaPOPTR_0008s05130.1
ORTHOMCL14337(5 genes,5 taxa):Carica papayaevm.TU.supercontig_1.346
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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