Basic Information
Gene Model:Bol004188
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000329
Sequence:
 | 
Gene Structure
Nucleotide Length:1033 bp
Transcript Length:555 bp
Protein Length:184 aa
Strand:-
Location:Scaffold000329: 27935 : 28967
Gene CDSs(5): 1-196 | 287-357 | 532-609 | 751-857 | 931-1033 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 11 139 4.7e-20IPR001789Signal transduction response regulator, receiver region
ProfileScanPS50110RESPONSE_REGULATORY 10 147 24.931IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 3 160 1.8e-22Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 11 152 6.1e-15Not foundNot found
superfamilySSF52172CheY-like 6 139 3.8e-25IPR011006CheY-like
HMMSmartSM00448no description 9 143 1.4e-14IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803664e-84ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRG33e-70Q0WRG3_ARATH Putative two-component response regulator 3 protein OS=Arabidopsis thaliana GN=At2g41310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G570407e-84K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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