Basic Information
Gene Model:Bol004173
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000330
Sequence:
 | 
Gene Structure
Nucleotide Length:687 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:-
Location:Scaffold000330: 375760 : 376446
Gene CDSs(1): 1-687 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 79 131 1.3e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 177 194 NANot foundNot found
Segsegseg 114 128 NANot foundNot found
HMMSmartSM00380no description 80 144 2.7e-37IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 79 141 5.6e-24IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 80 138 22.985IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 79 141 2.6e-24IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LND15e-65ERF94_ARATH Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6ZLB21e-53C6ZLB2_BRAOG Ethylene-responsive factor (Fragment) OS=Brassica oleracea var. gemmifera PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G232406e-38K14516ERF1ethylene-responsive transcription factor 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17296(3 genes,3 taxa):Arabidopsis thalianaAT1G06160.1
ORTHOMCL17296(3 genes,3 taxa):Brassica oleraceaBol004173
ORTHOMCL17296(3 genes,3 taxa):Brassica rapaBra032433
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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