Basic Information
Gene Model:Bol004110
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000330
Sequence:
 | 
Gene Structure
Nucleotide Length:1851 bp
Transcript Length:1263 bp
Protein Length:420 aa
Strand:+
Location:Scaffold000330: 76351 : 78201
Gene CDSs(3): 1-504 | 596-859 | 1357-1851 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 99 416 7.6e-64IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 98 415 3.3e-61IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 98 417 1.5e-110Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 98 417 1.5e-110IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 119 404 1.8e-51IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 157 165 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 110 409 2.6e-72IPR001932Protein phosphatase 2C-related
Segsegseg 344 366 NANot foundNot found
Segsegseg 303 316 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LNW31e-175P2C03_ARATH Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2BXQ21e-115B2BXQ2_9ROSI Putative uncharacterized protein OS=Cleome spinosa PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G074301e-175K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT1G07430.1
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT2G29380.1
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol004110
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol017589
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol041128
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra015579
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra018398
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra031574
ORTHOMCL1234(18 genes,8 taxa):Vitis viniferaGSVIVT01024875001
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs01t0846300-01
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs03t0268600-01
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.1
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.2
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.3
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s04210.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb01g039890.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb03g039630.1
ORTHOMCL1234(18 genes,8 taxa):Carica papayaevm.TU.supercontig_81.92
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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