Basic Information
Gene Model:Bol003963
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000334
Sequence:
 | 
Gene Structure
Nucleotide Length:2695 bp
Transcript Length:1518 bp
Protein Length:505 aa
Strand:-
Location:Scaffold000334: 123033 : 125727
Gene CDSs(9): 1-183 | 266-370 | 625-879 | 955-1095 | 1177-1602 | 1679-1756 | 1846-1892 | 1984-2133 | 2563-2695 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 20 131 0.00039IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 278 328 4.6e-10IPR014778Myb, DNA-binding
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 276 331 5.7e-30IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF52172CheY-like 15 135 6.1e-14IPR011006CheY-like
superfamilySSF46689Homeodomain-like 272 335 2.6e-18IPR009057Homeodomain-like
ProfileScanPS51294HTH_MYB 273 332 17.586IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 20 134 14.048IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 11 143 1.2e-07Not foundNot found
Gene3DG3DSA:1.10.10.60no description 272 335 5.1e-21IPR012287Homeodomain-related
Segsegseg 491 495 NANot foundNot found
Segsegseg 386 402 NANot foundNot found
Segsegseg 427 443 NANot foundNot found
Segsegseg 460 472 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q6LA430.0APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7PCE11e-132A7PCE1_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015824001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G161108e-31K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1576(17 genes,6 taxa):Arabidopsis thalianaAT4G18020.1
ORTHOMCL1576(17 genes,6 taxa):Brassica oleraceaBol003963
ORTHOMCL1576(17 genes,6 taxa):Brassica oleraceaBol037083
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra012623
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra013277
ORTHOMCL1576(17 genes,6 taxa):Brassica rapaBra013278
ORTHOMCL1576(17 genes,6 taxa):Vitis viniferaGSVIVT01013234001
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.1
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.2
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.3
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.4
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.5
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.6
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0001s02910.7
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0003s08600.1
ORTHOMCL1576(17 genes,6 taxa):Populus trichocarpaPOPTR_0003s08600.2
ORTHOMCL1576(17 genes,6 taxa):Carica papayaevm.TU.supercontig_6.417
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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