Basic Information
Gene Model:Bol003856
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000338
Sequence:
 | 
Gene Structure
Nucleotide Length:1996 bp
Transcript Length:1371 bp
Protein Length:456 aa
Strand:-
Location:Scaffold000338: 48071 : 50066
Gene CDSs(6): 1-530 | 610-814 | 896-1007 | 1088-1297 | 1406-1500 | 1778-1996 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 1 308 2.7e-37IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 365 371 NANot foundNot found
HMMPfamPF02225PA 80 171 3.1e-14IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 20 281 2.3e-08IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 246 256 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 1 456 3.9e-180IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 1 456 3.9e-180Not foundNot found
superfamilySSF52743Subtilisin-like 10 312 9.9e-40IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
Swiss-Prot
Best HitE_value Description
Q395472e-93CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1
TrEMBL
Best HitE_value Description
O233570.0O23357_ARATH Cucumisin OS=Arabidopsis thaliana GN=dl3561c PE=4 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46850.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G00230.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G15040.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G03620.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58820.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58830.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59090.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59100.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59120.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59130.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59190.1
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol001689
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol003856
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol005450
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol011526
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015497
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015517
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015518
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015519
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015521
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016817
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016822
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol019553
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol025945
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol040476
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002586
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002592
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006728
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006729
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra018188
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020333
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020347
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020348
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020349
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020350
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020351
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024883
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024884
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra036923
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra037326
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010668001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010670001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016439001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016443001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016445001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016446001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016447001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016448001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016449001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016451001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016452001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016455001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016456001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018437001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018438001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01019877001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024856001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024857001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024859001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024948001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027583001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027584001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027585001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01033810001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037483001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037485001
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0002s15330.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0003s12010.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0006s11540.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04280.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04290.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s14800.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20390.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20400.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20420.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20430.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0012s13960.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0014s07050.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005460.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005470.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005530.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.contig_38276.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.160
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.161
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_1887.2
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.194
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.195
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.5
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.6
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_5.46
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.57
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.58
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.70
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.71
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.73
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.74
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.76
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.77
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.79
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.80
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.83
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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