Basic Information
Gene Model:Bol003798
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000339
Sequence:
 | 
Gene Structure
Nucleotide Length:5788 bp
Transcript Length:1926 bp
Protein Length:641 aa
Strand:-
Location:Scaffold000339: 83129 : 88916
Gene CDSs(18): 1-132 | 378-515 | 619-717 | 799-879 | 1012-1074 | 1168-1215 | 1304-1672 | 1764-1865 | 2024-2148 | 2229-2295 | 2427-2486 | 2623-2701 | 2887-2990 | 4261-4398 | 4499-4608 | 5112-5203 | 5522-5548 | 5697-5788 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 600 612 NANot foundNot found
Segsegseg 538 546 NANot foundNot found
Segsegseg 396 407 NANot foundNot found
Segsegseg 155 164 NANot foundNot found
Segsegseg 189 200 NANot foundNot found
ProfileScanPS50850MFS 188 629 48.320Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 158 509 8.1e-218Not foundNot found
HMMPantherPTHR11600:SF83SUGAR TRANSPORTER 158 509 8.1e-218Not foundNot found
HMMTigrTIGR00879SP: MFS transporter, 152 636 6.5e-74IPR003663Sugar/inositol transporter
HMMPfamPF00083Sugar_tr 188 640 1.9e-91IPR005828General substrate transporter
HMMPfamPF05071NDUFA12 49 155 5e-59IPR007763NADH:ubiquinone oxidoreductase, 17.2kDa subunit
PatternScanPS00217SUGAR_TRANSPORT_2 291 316 NAIPR005829Sugar transporter, conserved site
PatternScanPS00216SUGAR_TRANSPORT_1 499 515 NAIPR005829Sugar transporter, conserved site
superfamilySSF103473MFS general substrat 172 637 1e-59IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0008137 Molecular Function NADH dehydrogenase (ubiquinone) activity
GO:0009055 Molecular Function electron carrier activity
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q8L6Z80.0XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PFB90.0A9PFB9_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G031004e-90K11352NDUFA12--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3052(13 genes,7 taxa):Arabidopsis thalianaAT3G03090.1
ORTHOMCL3052(13 genes,7 taxa):Arabidopsis thalianaAT5G17010.1
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol000835
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol002245
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol003798
ORTHOMCL3052(13 genes,7 taxa):Brassica oleraceaBol021315
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra021374
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra023592
ORTHOMCL3052(13 genes,7 taxa):Brassica rapaBra032018
ORTHOMCL3052(13 genes,7 taxa):Vitis viniferaGSVIVT01024413001
ORTHOMCL3052(13 genes,7 taxa):Oryza sativaOs10t0579200-01
ORTHOMCL3052(13 genes,7 taxa):Populus trichocarpaPOPTR_0019s08330.1
ORTHOMCL3052(13 genes,7 taxa):Sorghum bicolorSb01g027800.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo