Basic Information
Gene Model:Bol003757
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000341
Sequence:
 | 
Gene Structure
Nucleotide Length:333 bp
Transcript Length:333 bp
Protein Length:110 aa
Strand:-
Location:Scaffold000341: 368446 : 368778
Gene CDSs(1): 1-333 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 51 63 NANot foundNot found
PatternScanPS00028ZINC_FINGER_C2H2_1 71 92 NAIPR007087Zinc finger, C2H2-type
BlastProDomPD629468LCR59_ARATH_P82773; 3 50 5e-17Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
P827731e-27DF182_ARATH Defensin-like protein 182 OS=Arabidopsis thaliana GN=PDF3.2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8L8U07e-30Q8L8U0_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23476(2 genes,2 taxa):Brassica oleraceaBol003757
ORTHOMCL23476(2 genes,2 taxa):Brassica rapaBra012502
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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