Basic Information
Gene Model:Bol003693
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000343
Sequence:
 | 
Gene Structure
Nucleotide Length:2108 bp
Transcript Length:1197 bp
Protein Length:398 aa
Strand:+
Location:Scaffold000343: 326671 : 328778
Gene CDSs(4): 1-356 | 432-735 | 1476-1943 | 2040-2108 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50920SOLCAR 309 394 18.029IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 195 280 21.548IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 102 185 18.780IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 310 398 2.3e-19IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 196 285 2.6e-23IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 103 190 4.4e-22IPR018108Mitochondrial substrate/solute carrier
HMMPantherPTHR11896MITOCHONDRIAL CARRIE 95 398 4.6e-92IPR001993Mitochondrial substrate carrier
HMMPantherPTHR11896:SF34MITOCHONDRIAL CARRIE 95 398 4.6e-92Not foundNot found
Segsegseg 7 21 NANot foundNot found
Segsegseg 202 213 NANot foundNot found
superfamilySSF103506Mitochondrial carrie 99 391 1e-65IPR001993Mitochondrial substrate carrier
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q54MZ41e-40MCFB_DICDI Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9C9R41e-177Q9C9R4_ARATH Putative mitochondrial carrier protein; 51683-53289 OS=Arabidopsis thaliana GN=T11I11.12 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cel:W02D3.62e-28K05863ANTsolute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17861(3 genes,3 taxa):Arabidopsis thalianaAT1G78180.1
ORTHOMCL17861(3 genes,3 taxa):Brassica oleraceaBol003693
ORTHOMCL17861(3 genes,3 taxa):Brassica rapaBra003653
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo