Basic Information
Gene Model:Bol003681
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000343
Sequence:
 | 
Gene Structure
Nucleotide Length:1734 bp
Transcript Length:1113 bp
Protein Length:370 aa
Strand:+
Location:Scaffold000343: 203631 : 205364
Gene CDSs(7): 1-168 | 260-355 | 448-507 | 678-755 | 850-1176 | 1263-1493 | 1582-1734 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 79 163 8.3e-08IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 91 106 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 135 149 NANot foundNot found
Segsegseg 120 134 NANot foundNot found
Coilcoilcoiled-coil 107 135 NANot foundNot found
ProfileScanPS50217BZIP 86 130 9.289IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 84 116 7.8e-09IPR011616bZIP transcription factor, bZIP-1
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q93ZE20.0TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WQ440.0Q0WQ44_ARATH BZip transcription factor AtbZip50 OS=Arabidopsis thaliana GN=At1g77920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G779200.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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