Basic Information
Gene Model:Bol003677
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000343
Sequence:
 | 
Gene Structure
Nucleotide Length:1736 bp
Transcript Length:1632 bp
Protein Length:543 aa
Strand:+
Location:Scaffold000343: 157905 : 159640
Gene CDSs(2): 1-990 | 1095-1736 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 466 479 NANot foundNot found
Segsegseg 48 58 NANot foundNot found
Segsegseg 104 114 NANot foundNot found
ProfileScanPS50863B3 119 221 12.647IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 106 224 2e-37Not foundNot found
HMMPfamPF06507Auxin_resp 253 317 1.4e-27IPR010525Auxin response factor
HMMPfamPF02362B3 118 223 9.2e-32IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q84WU60.0ARFQ_ARATH Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RJC51e-145B9RJC5_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1033160 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15971201e-54K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9363(8 genes,5 taxa):Arabidopsis thalianaAT1G77850.1
ORTHOMCL9363(8 genes,5 taxa):Brassica oleraceaBol003677
ORTHOMCL9363(8 genes,5 taxa):Brassica oleraceaBol027532
ORTHOMCL9363(8 genes,5 taxa):Brassica rapaBra003665
ORTHOMCL9363(8 genes,5 taxa):Brassica rapaBra015651
ORTHOMCL9363(8 genes,5 taxa):Populus trichocarpaPOPTR_0002s09050.1
ORTHOMCL9363(8 genes,5 taxa):Populus trichocarpaPOPTR_0005s16320.1
ORTHOMCL9363(8 genes,5 taxa):Carica papayaevm.TU.supercontig_49.120
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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