Basic Information
Gene Model:Bol003670
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000343
Sequence:
 | 
Gene Structure
Nucleotide Length:2456 bp
Transcript Length:1311 bp
Protein Length:436 aa
Strand:-
Location:Scaffold000343: 62271 : 64726
Gene CDSs(7): 1-195 | 614-1079 | 1159-1256 | 1364-1442 | 1638-1750 | 1828-2013 | 2283-2456 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 394 409 NANot foundNot found
Segsegseg 13 32 NANot foundNot found
PatternScanPS00267TACHYKININ 84 89 NAIPR013055Tachykinin/Neurokinin like, conserved site
HMMPfamPF01490Aa_trans 43 402 3.3e-64IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 31 435 9.1e-274Not foundNot found
HMMPantherPTHR22950:SF3AUX1-LIKE AMINO ACID 31 435 9.1e-274Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9CA250.0LAX3_ARATH Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1
TrEMBL
Best HitE_value Description
A3RID40.0A3RID4_CASGL Auxin influx transport protein OS=Casuarina glauca GN=LAX3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G776900.0K13946AUX1, LAXauxin influx carrier (AUX1 LAX family)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL143(52 genes,8 taxa):Arabidopsis thalianaAT1G77690.1
ORTHOMCL143(52 genes,8 taxa):Arabidopsis thalianaAT2G21050.1
ORTHOMCL143(52 genes,8 taxa):Arabidopsis thalianaAT2G38120.1
ORTHOMCL143(52 genes,8 taxa):Arabidopsis thalianaAT5G01240.1
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol002373
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol003670
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol015047
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol017762
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol019000
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol020323
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol020456
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol025281
ORTHOMCL143(52 genes,8 taxa):Brassica oleraceaBol044800
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra000039
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra000160
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra000584
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra003674
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra005136
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra008325
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra009636
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra017136
ORTHOMCL143(52 genes,8 taxa):Brassica rapaBra031158
ORTHOMCL143(52 genes,8 taxa):Vitis viniferaGSVIVT01008917001
ORTHOMCL143(52 genes,8 taxa):Vitis viniferaGSVIVT01024054001
ORTHOMCL143(52 genes,8 taxa):Vitis viniferaGSVIVT01032855001
ORTHOMCL143(52 genes,8 taxa):Vitis viniferaGSVIVT01033986001
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs01t0856500-01
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs01t0856500-02
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs01t0856500-03
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs01t0856500-04
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs03t0244600-01
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs10t0147400-01
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs10t0147400-02
ORTHOMCL143(52 genes,8 taxa):Oryza sativaOs11t0169200-00
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0002s08750.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0004s17860.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0005s16020.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0006s09940.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0008s06630.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0008s06630.2
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0009s13470.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0010s19840.1
ORTHOMCL143(52 genes,8 taxa):Populus trichocarpaPOPTR_0016s12100.1
ORTHOMCL143(52 genes,8 taxa):Sorghum bicolorSb01g026240.1
ORTHOMCL143(52 genes,8 taxa):Sorghum bicolorSb01g041270.1
ORTHOMCL143(52 genes,8 taxa):Sorghum bicolorSb03g040320.1
ORTHOMCL143(52 genes,8 taxa):Sorghum bicolorSb05g004250.1
ORTHOMCL143(52 genes,8 taxa):Sorghum bicolorSb09g021990.1
ORTHOMCL143(52 genes,8 taxa):Carica papayaevm.TU.supercontig_1125.1
ORTHOMCL143(52 genes,8 taxa):Carica papayaevm.TU.supercontig_19.207
ORTHOMCL143(52 genes,8 taxa):Carica papayaevm.TU.supercontig_36.17
ORTHOMCL143(52 genes,8 taxa):Carica papayaevm.TU.supercontig_37.163
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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