Basic Information
Gene Model:Bol003579
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000347
Sequence:
 | 
Gene Structure
Nucleotide Length:2799 bp
Transcript Length:2109 bp
Protein Length:702 aa
Strand:-
Location:Scaffold000347: 348464 : 351262
Gene CDSs(8): 1-566 | 737-929 | 1020-1134 | 1224-1510 | 1585-2255 | 2337-2492 | 2584-2681 | 2777-2799 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02225PA 321 408 0.011IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 166 522 5.3e-21IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 1 57 1.4e-15IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 1 701 0IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 1 701 0Not foundNot found
Segsegseg 484 498 NANot foundNot found
PatternScanPS00138SUBTILASE_SER 480 490 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00137SUBTILASE_HIS 167 177 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF52743Subtilisin-like 39 558 2.6e-79IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 75 552 3.6e-69IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653511e-114SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q1PDX50.0Q1PDX5_ARATH Subtilase family protein OS=Arabidopsis thaliana GN=At5g11940 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32940.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32950.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32960.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT1G32970.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10510.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10520.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10530.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10540.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G10550.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21323.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21630.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21640.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT4G21650.1
ORTHOMCL88(65 genes,8 taxa):Arabidopsis thalianaAT5G11940.1
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol003579
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol022191
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024298
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol024299
ORTHOMCL88(65 genes,8 taxa):Brassica oleraceaBol028435
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004153
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra004154
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra013544
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra022966
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023297
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023300
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra023349
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra033170
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra037906
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038766
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038768
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038777
ORTHOMCL88(65 genes,8 taxa):Brassica rapaBra038778
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019686001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01019687001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01024195001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038620001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038641001
ORTHOMCL88(65 genes,8 taxa):Vitis viniferaGSVIVT01038642001
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0794800-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs01t0795200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0269600-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0270900-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs02t0271000-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121100-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0121300-00
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-01
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127200-02
ORTHOMCL88(65 genes,8 taxa):Oryza sativaOs04t0127300-01
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45450.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45470.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45480.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0001s45490.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0004s16850.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0009s12610.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15400.1
ORTHOMCL88(65 genes,8 taxa):Populus trichocarpaPOPTR_0011s15440.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb02g030760.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb03g037010.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022600.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb05g022620.1
ORTHOMCL88(65 genes,8 taxa):Sorghum bicolorSb06g001140.1
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1420.2
ORTHOMCL88(65 genes,8 taxa):Carica papayaevm.TU.supercontig_1497.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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