Basic Information
Gene Model:Bol003544
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000347
Sequence:
 | 
Gene Structure
Nucleotide Length:10547 bp
Transcript Length:5778 bp
Protein Length:1925 aa
Strand:+
Location:Scaffold000347: 108762 : 119308
Gene CDSs(41): 1-196 | 275-375 | 874-998 | 1098-1191 | 1275-1385 | 1448-1564 | 1650-1742 | 1805-1896 | 2117-2243 | 2323-2460 | 2534-2610 | 2706-2799 | 2877-3005 | 3091-3205 | 3274-3608 | 3694-3746 | 3822-3882 | 3970-4051 | 4135-4184 | 4273-4359 | 4438-4578 | 4653-4747 | 4818-4902 | 4974-5134 | 5248-5371 | 5473-5573 | 5647-5779 | 5856-6007 | 6179-6288 | 6370-6492 | 6572-6640 | 6711-6900 | 6975-7125 | 7201-7320 | 7416-7534 | 7775-7887 | 7975-8204 | 8682-9479 | 9562-9612 | 10018-10203 | 10299-10547 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02364Glucan_synthase 1056 1797 1e-233IPR003440Glycosyl transferase, family 48
HMMPantherPTHR12741LYST-INTERACTING PRO 37 158 8.2e-09Not foundNot found
Segsegseg 1711 1723 NANot foundNot found
Segsegseg 5 19 NANot foundNot found
Segsegseg 1136 1153 NANot foundNot found
Coilcoilcoiled-coil 1133 1154 NANot foundNot found
Coilcoilcoiled-coil 125 146 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000148 Cellular Component 1,3-beta-glucan synthase complex
GO:0003843 Molecular Function 1,3-beta-glucan synthase activity
GO:0006075 Biological Process 1,3-beta-glucan biosynthetic process
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9LXT90.0CALS3_ARATH Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SQ550.0B9SQ55_RICCO Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0146290 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G130000.0K11000CALScallose synthase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G05570.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT1G06490.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G13680.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G31960.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT2G36850.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G07160.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT3G59100.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G03550.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT4G04970.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G13000.1
ORTHOMCL29(108 genes,8 taxa):Arabidopsis thalianaAT5G36870.1
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol001670
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol002814
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol003544
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol004161
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol005100
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol006691
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol007650
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol008141
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol014106
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol019328
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol020665
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol023771
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032168
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol032652
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol034005
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol040999
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol041063
ORTHOMCL29(108 genes,8 taxa):Brassica oleraceaBol043468
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra001239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra003364
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005239
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005620
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra005624
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra008864
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015436
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra015504
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra023386
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra027328
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029541
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra029628
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra032416
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra034218
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra037213
ORTHOMCL29(108 genes,8 taxa):Brassica rapaBra040364
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01000622001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01001361001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01005204001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01007560001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020548001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01020854001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025362001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025370001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01025372001
ORTHOMCL29(108 genes,8 taxa):Vitis viniferaGSVIVT01026489001
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533000-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0533500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-03
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs01t0754200-04
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0247050-00
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs02t0832400-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0119500-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128100-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs03t0128200-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-01
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0112800-02
ORTHOMCL29(108 genes,8 taxa):Oryza sativaOs06t0182300-01
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04930.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04940.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s04970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0001s23710.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0002s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0003s21690.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s05970.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0005s22510.2
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s05210.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0011s09740.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0013s13490.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10080.1
ORTHOMCL29(108 genes,8 taxa):Populus trichocarpaPOPTR_0015s10090.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g048630.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g049270.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050470.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb01g050480.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023490.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g023520.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g030800.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb03g034880.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g008830.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb04g038510.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g005550.1
ORTHOMCL29(108 genes,8 taxa):Sorghum bicolorSb10g030970.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_189.9
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_2050.3
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_25.167
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_3407.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_452.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.97
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_50.98
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_714.1
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_858.2
ORTHOMCL29(108 genes,8 taxa):Carica papayaevm.TU.supercontig_973.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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