Basic Information |
Gene Model: | Bol003524 |
Gene Family: | Transcription Factor Families |
Chromosome: | Cun |
Scaffold: | Scaffold000348 |
Sequence: | |
Gene Structure |
|
Nucleotide Length: | 417 bp |
Transcript Length: | 417 bp |
Protein Length: | 138 aa |
Strand: | - |
Location: | Scaffold000348: 360404 : 360820 |
Gene CDSs(1): | 1-417 | |
Protein Sequence Features |
Interpro |
 |
Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | HMMPfam | PF00847 | AP2 |
12 |
63 |
4.1e-15 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | Gene3D | G3DSA:3.30.730.10 | no description |
12 |
77 |
1.6e-16 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | superfamily | SSF54171 | DNA-binding domain |
12 |
77 |
1.2e-17 | IPR016177 | DNA-binding, integrase-type | HMMSmart | SM00380 | no description |
13 |
80 |
5.6e-27 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | ProfileScan | PS51032 | AP2_ERF |
13 |
74 |
20.903 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | |
Gene Ontology |
GO Term | GO Type | Description |
GO:0003677 |
Molecular Function |
DNA binding | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
Swiss-Prot |
Best Hit | E_value |
Description | Q9C9I8 | 1e-56 | ERF20_ARATH Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1 |
|
TrEMBL |
Best Hit | E_value |
Description | Note: this gene was not detected its best hit in TrEMBL database. |
|
KEGG |
|
Gene Cluster |
Orthologs |
OrthoMCL Group | Species | Gene List | ORTHOMCL13881(5 genes,3 taxa): | Arabidopsis thaliana | AT1G71520.1 | ORTHOMCL13881(5 genes,3 taxa): | Brassica oleracea | Bol003524 | ORTHOMCL13881(5 genes,3 taxa): | Brassica oleracea | Bol034947 | ORTHOMCL13881(5 genes,3 taxa): | Brassica rapa | Bra007974 | ORTHOMCL13881(5 genes,3 taxa): | Brassica rapa | Bra016133 |
|
Tandem Duplication |
Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
Synteny Analysis |
Synteny Genes |
Note: This gene was not anchored on pseudo-chromosomes. |
Synteny Regions |
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
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Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
Trplicated Block |
Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
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