Basic Information
Gene Model:Bol003524
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000348
Sequence:
 | 
Gene Structure
Nucleotide Length:417 bp
Transcript Length:417 bp
Protein Length:138 aa
Strand:-
Location:Scaffold000348: 360404 : 360820
Gene CDSs(1): 1-417 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 12 63 4.1e-15IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 12 77 1.6e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 12 77 1.2e-17IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 13 80 5.6e-27IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 13 74 20.903IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C9I81e-56ERF20_ARATH Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G067466e-17K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13881(5 genes,3 taxa):Arabidopsis thalianaAT1G71520.1
ORTHOMCL13881(5 genes,3 taxa):Brassica oleraceaBol003524
ORTHOMCL13881(5 genes,3 taxa):Brassica oleraceaBol034947
ORTHOMCL13881(5 genes,3 taxa):Brassica rapaBra007974
ORTHOMCL13881(5 genes,3 taxa):Brassica rapaBra016133
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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