| Basic Information |
| Gene Model: | Bol003524 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | Cun |
| Scaffold: | Scaffold000348 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 417 bp |
| Transcript Length: | 417 bp |
| Protein Length: | 138 aa |
| Strand: | - |
| Location: | Scaffold000348: 360404 : 360820 |
| Gene CDSs(1): | 1-417 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMPfam | PF00847 | AP2 |
12 |
63 |
4.1e-15 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Gene3D | G3DSA:3.30.730.10 | no description |
12 |
77 |
1.6e-16 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | superfamily | SSF54171 | DNA-binding domain |
12 |
77 |
1.2e-17 | IPR016177 | DNA-binding, integrase-type | | HMMSmart | SM00380 | no description |
13 |
80 |
5.6e-27 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | ProfileScan | PS51032 | AP2_ERF |
13 |
74 |
20.903 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003677 |
Molecular Function |
DNA binding | | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9C9I8 | 1e-56 | ERF20_ARATH Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | Note: this gene was not detected its best hit in TrEMBL database. |
|
| KEGG |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL13881(5 genes,3 taxa): | Arabidopsis thaliana | AT1G71520.1 | | ORTHOMCL13881(5 genes,3 taxa): | Brassica oleracea | Bol003524 | | ORTHOMCL13881(5 genes,3 taxa): | Brassica oleracea | Bol034947 | | ORTHOMCL13881(5 genes,3 taxa): | Brassica rapa | Bra007974 | | ORTHOMCL13881(5 genes,3 taxa): | Brassica rapa | Bra016133 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Note: This gene was not anchored on pseudo-chromosomes. |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
