Basic Information
Gene Model:Bol003522
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000348
Sequence:
 | 
Gene Structure
Nucleotide Length:2423 bp
Transcript Length:1338 bp
Protein Length:445 aa
Strand:-
Location:Scaffold000348: 351929 : 354351
Gene CDSs(8): 1-99 | 186-254 | 344-435 | 519-624 | 708-1104 | 1176-1559 | 1634-1797 | 2397-2423 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01490Aa_trans 32 432 3.8e-126IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 20 445 6.8e-105Not foundNot found
Segsegseg 371 384 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9C9J00.0LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1440393e-11K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17787(3 genes,3 taxa):Arabidopsis thalianaAT1G71680.1
ORTHOMCL17787(3 genes,3 taxa):Brassica oleraceaBol003522
ORTHOMCL17787(3 genes,3 taxa):Carica papayaevm.TU.supercontig_438.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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