Basic Information
Gene Model:Bol003509
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000348
Sequence:
 | 
Gene Structure
Nucleotide Length:1023 bp
Transcript Length:564 bp
Protein Length:187 aa
Strand:+
Location:Scaffold000348: 253095 : 254117
Gene CDSs(3): 1-300 | 535-699 | 925-1023 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00156Pribosyltran 8 132 7.5e-20IPR000836Phosphoribosyltransferase
HMMPantherPTHR22573:SF9HYPOXANTHINE-GUANINE 1 186 3.2e-83Not foundNot found
HMMPantherPTHR22573PHOSPHOHEXOMUTASE FA 1 186 3.2e-83Not foundNot found
Gene3DG3DSA:3.40.50.2020no description 5 186 4.3e-56Not foundNot found
superfamilySSF53271PRTase-like 4 184 1.1e-49Not foundNot found
HMMTigrTIGR01203HGPRTase: hypoxanthi 10 182 3.9e-70IPR005904Hypoxanthine phosphoribosyl transferase
Gene Ontology
GO TermGO TypeDescription
GO:0004422 Molecular Function hypoxanthine phosphoribosyltransferase activity
GO:0005737 Cellular Component cytoplasm
GO:0006166 Biological Process purine ribonucleoside salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q839B21e-43HPRT_ENTFA Hypoxanthine-guanine phosphoribosyltransferase OS=Enterococcus faecalis GN=hpt PE=3 SV=1
TrEMBL
Best HitE_value Description
Q8L8L72e-89Q8L8L7_ARATH Hypoxanthine ribosyl transferase, putative OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G717502e-90K00760E2.4.2.8, hpthypoxanthine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9298(8 genes,8 taxa):Arabidopsis thalianaAT1G71750.1
ORTHOMCL9298(8 genes,8 taxa):Brassica oleraceaBol003509
ORTHOMCL9298(8 genes,8 taxa):Brassica rapaBra016120
ORTHOMCL9298(8 genes,8 taxa):Vitis viniferaGSVIVT01013701001
ORTHOMCL9298(8 genes,8 taxa):Oryza sativaOs05t0182201-01
ORTHOMCL9298(8 genes,8 taxa):Populus trichocarpaPOPTR_0005s22030.1
ORTHOMCL9298(8 genes,8 taxa):Sorghum bicolorSb09g005630.1
ORTHOMCL9298(8 genes,8 taxa):Carica papayaevm.TU.supercontig_26.121
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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