Basic Information
Gene Model:Bol003497
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000348
Sequence:
 | 
Gene Structure
Nucleotide Length:3605 bp
Transcript Length:1338 bp
Protein Length:445 aa
Strand:+
Location:Scaffold000348: 171822 : 175426
Gene CDSs(9): 1-174 | 252-348 | 437-519 | 602-748 | 1251-1385 | 1506-1657 | 1742-1883 | 2623-2704 | 3280-3605 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 242 309 15.992IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50055TYR_PHOSPHATASE_PTP 50 323 42.288IPR000242Protein-tyrosine phosphatase, receptor/non-receptor type
superfamilySSF52799(Phosphotyrosine pro 21 309 1.9e-69Not foundNot found
Segsegseg 353 366 NANot foundNot found
Segsegseg 120 129 NANot foundNot found
HMMPantherPTHR19134:SF28PROTEIN-TYROSINE PHO 34 310 1.6e-217Not foundNot found
HMMPantherPTHR19134PROTEIN-TYROSINE PHO 34 310 1.6e-217Not foundNot found
Gene3DG3DSA:3.90.190.10no description 58 324 1.6e-71Not foundNot found
HMMPfamPF00102Y_phosphatase 79 309 2.1e-91IPR000242Protein-tyrosine phosphatase, receptor/non-receptor type
PatternScanPS00383TYR_PHOSPHATASE_1 260 270 NAIPR016130Protein-tyrosine phosphatase, active site
HMMSmartSM00404no description 220 322 4.1e-25IPR003595Protein-tyrosine phosphatase, catalytic
HMMSmartSM00194no description 49 325 1.7e-94IPR000242Protein-tyrosine phosphatase, receptor/non-receptor type
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
P293508e-37PTN6_HUMAN Tyrosine-protein phosphatase non-receptor type 6 OS=Homo sapiens GN=PTPN6 PE=1 SV=1
TrEMBL
Best HitE_value Description
O826561e-141O82656_ARATH F14O23.24 protein OS=Arabidopsis thaliana GN=PTP1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002598471e-129K01104E3.1.3.48protein-tyrosine phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7455(9 genes,8 taxa):Arabidopsis thalianaAT1G71860.1
ORTHOMCL7455(9 genes,8 taxa):Brassica oleraceaBol003497
ORTHOMCL7455(9 genes,8 taxa):Brassica rapaBra016108
ORTHOMCL7455(9 genes,8 taxa):Vitis viniferaGSVIVT01034890001
ORTHOMCL7455(9 genes,8 taxa):Oryza sativaOs12t0174800-01
ORTHOMCL7455(9 genes,8 taxa):Oryza sativaOs12t0174800-02
ORTHOMCL7455(9 genes,8 taxa):Populus trichocarpaPOPTR_0013s11970.1
ORTHOMCL7455(9 genes,8 taxa):Sorghum bicolorSb08g004710.1
ORTHOMCL7455(9 genes,8 taxa):Carica papayaevm.TU.supercontig_64.130
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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