Basic Information
Gene Model:Bol003480
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000349
Sequence:
 | 
Gene Structure
Nucleotide Length:4082 bp
Transcript Length:2241 bp
Protein Length:746 aa
Strand:-
Location:Scaffold000349: 333337 : 337418
Gene CDSs(9): 1-735 | 809-1336 | 1722-1868 | 2173-2336 | 2437-2582 | 2784-2888 | 2984-3105 | 3325-3446 | 3911-4082 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 459 717 28.329IPR000719Protein kinase, catalytic domain
HMMSmartSM00220no description 459 713 1.1e-11IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 459 709 1.6e-11IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
superfamilySSF56112Protein kinase-like 448 738 1e-52IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 407 744 9.4e-215Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 407 744 9.4e-215Not foundNot found
HMMPfamPF07714Pkinase_Tyr 464 605 1.2e-14IPR001245Tyrosine-protein kinase, catalytic domain
Segsegseg 340 352 NANot foundNot found
Segsegseg 245 251 NANot foundNot found
Coilcoilcoiled-coil 404 432 NANot foundNot found
Coilcoilcoiled-coil 369 393 NANot foundNot found
Coilcoilcoiled-coil 334 362 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 531 737 1e-31Not foundNot found
Gene3DG3DSA:3.30.200.20no description 440 531 2.4e-14Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q94A510.0PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
osa:43375937e-36K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT2G45910.1
ORTHOMCL726(23 genes,8 taxa):Arabidopsis thalianaAT3G49060.1
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol003480
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol021760
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol030222
ORTHOMCL726(23 genes,8 taxa):Brassica oleraceaBol037390
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra004947
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra018013
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra019576
ORTHOMCL726(23 genes,8 taxa):Brassica rapaBra039305
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01026936001
ORTHOMCL726(23 genes,8 taxa):Vitis viniferaGSVIVT01028909001
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs02t0665500-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-01
ORTHOMCL726(23 genes,8 taxa):Oryza sativaOs10t0548700-02
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16150.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0002s16160.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0012s13020.1
ORTHOMCL726(23 genes,8 taxa):Populus trichocarpaPOPTR_0014s08060.1
ORTHOMCL726(23 genes,8 taxa):Sorghum bicolorSb04g032450.1
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_107.71
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.7
ORTHOMCL726(23 genes,8 taxa):Carica papayaevm.TU.supercontig_11.9
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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