Basic Information
Gene Model:Bol003429
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000351
Sequence:
 | 
Gene Structure
Nucleotide Length:2309 bp
Transcript Length:1332 bp
Protein Length:443 aa
Strand:+
Location:Scaffold000351: 326763 : 329071
Gene CDSs(7): 1-208 | 292-395 | 913-1034 | 1125-1229 | 1360-1588 | 1674-1997 | 2070-2309 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 317 342 NANot foundNot found
Segsegseg 267 287 NANot foundNot found
Segsegseg 239 250 NANot foundNot found
Segsegseg 78 88 NANot foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 355 431 5.9e-30Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 355 431 5.9e-30Not foundNot found
Gene3DG3DSA:3.30.40.10no description 350 427 6.3e-24Not foundNot found
HMMSmartSM00504no description 357 420 2.1e-27IPR003613U box domain
Coilcoilcoiled-coil 317 338 NANot foundNot found
Coilcoilcoiled-coil 72 100 NANot foundNot found
Coilcoilcoiled-coil 243 299 NANot foundNot found
HMMPfamPF04564U-box 353 427 1.8e-23IPR003613U box domain
superfamilySSF57850RING/U-box 350 425 1.6e-16Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GZ841e-153PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178796e-10K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23447(2 genes,2 taxa):Brassica oleraceaBol003429
ORTHOMCL23447(2 genes,2 taxa):Brassica rapaBra003448
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo