Basic Information
Gene Model:Bol003334
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000355
Sequence:
 | 
Gene Structure
Nucleotide Length:2267 bp
Transcript Length:1128 bp
Protein Length:375 aa
Strand:+
Location:Scaffold000355: 64276 : 66542
Gene CDSs(7): 1-200 | 300-362 | 1054-1170 | 1254-1509 | 1588-1746 | 1837-1988 | 2087-2267 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 46 164 0.00044Not foundNot found
superfamilySSF103481Multidrug resistance 228 339 1e-06Not foundNot found
HMMPfamPF00892DUF6 22 129 1.5e-06IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 197 211 NANot foundNot found
Segsegseg 77 92 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1636e-305NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5833(10 genes,6 taxa):Arabidopsis thalianaAT1G70260.1
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol003334
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol017399
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol032985
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra003959
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra007904
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra016228
ORTHOMCL5833(10 genes,6 taxa):Vitis viniferaGSVIVT01020185001
ORTHOMCL5833(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s10610.1
ORTHOMCL5833(10 genes,6 taxa):Carica papayaevm.TU.supercontig_258.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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