Basic Information
Gene Model:Bol003322
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000356
Sequence:
 | 
Gene Structure
Nucleotide Length:4546 bp
Transcript Length:3600 bp
Protein Length:1199 aa
Strand:-
Location:Scaffold000356: 214522 : 219067
Gene CDSs(8): 1-627 | 696-1112 | 1196-1405 | 1472-1580 | 1685-1773 | 1842-2118 | 2191-3656 | 4142-4546 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81653Calcium ATPase, tran 140 288 9.4e-18Not foundNot found
superfamilySSF81665Calcium ATPase, tran 419 1147 1.3e-06Not foundNot found
superfamilySSF81660Metal cation-transpo 487 709 3.2e-28Not foundNot found
superfamilySSF56784HAD-like 415 914 5.1e-39Not foundNot found
PatternScanPS00154ATPASE_E1_E2 430 436 NAIPR018303ATPase, P-type phosphorylation site
HMMPfamPF08282Hydrolase_3 865 885 0.00011IPR013200HAD superfamily hydrolase-like, type 3
HMMPfamPF00702Hydrolase 424 737 1.4e-07IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00122E1-E2_ATPase 113 397 0.00019IPR008250ATPase, P-type, ATPase-associated region
HMMTigrTIGR01494ATPase_P-type: ATPas 841 956 4.5e-38IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 702 752 8.2e-19IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 362 450 5e-18IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 108 208 1.4e-20IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01652ATPase-Plipid: phosp 59 1154 0IPR006539ATPase, P-type, phospholipid-translocating, flippase
Gene3DG3DSA:3.40.50.1000no description 700 914 1.7e-25Not foundNot found
HMMPantherPTHR11939CATION-TRANSPORTING 50 999 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF18PHOSPHOLIPID-TRANSPO 50 999 0Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000287 Molecular Function magnesium ion binding
GO:0003824 Molecular Function catalytic activity
GO:0004012 Molecular Function phospholipid-translocating ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0008152 Biological Process metabolic process
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0015914 Biological Process phospholipid transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
Q9SX330.0ALA9_ARATH Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G687100.0K01530E3.6.3.1phospholipid-translocating ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G13210.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G17500.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G26130.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G54280.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G59820.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G68710.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT1G72700.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G25610.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT3G27870.1
ORTHOMCL42(96 genes,8 taxa):Arabidopsis thalianaAT5G04930.1
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol001303
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol003322
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol004013
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol009768
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol013357
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol015388
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol020026
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol023997
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol026323
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031255
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol031426
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol034864
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol035171
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol036567
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol040422
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042735
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol042929
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol043306
ORTHOMCL42(96 genes,8 taxa):Brassica oleraceaBol044116
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004020
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra004332
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra005828
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra008042
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra009410
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra012469
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra014364
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra016040
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra017897
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra019818
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025150
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra025307
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026515
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra026919
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra030991
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra031711
ORTHOMCL42(96 genes,8 taxa):Brassica rapaBra035422
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01003381001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01008205001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01012005001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01013643001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01016806001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01027207001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01030172001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01032462001
ORTHOMCL42(96 genes,8 taxa):Vitis viniferaGSVIVT01034717001
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs01t0277600-00
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326100-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0326200-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs03t0334700-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs05t0100600-02
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs06t0565900-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-01
ORTHOMCL42(96 genes,8 taxa):Oryza sativaOs10t0412000-02
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s11630.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s20440.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0001s34920.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0003s04180.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0006s10970.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01500.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s01520.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s11060.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0008s19560.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s04910.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s14270.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0010s25250.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.1
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0012s05450.2
ORTHOMCL42(96 genes,8 taxa):Populus trichocarpaPOPTR_0016s14500.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g022190.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036200.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb01g036650.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb03g011170.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb07g019240.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g014640.1
ORTHOMCL42(96 genes,8 taxa):Sorghum bicolorSb10g022370.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1.239
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_13.70
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_1552.1
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_25.77
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_5.300
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_54.37
ORTHOMCL42(96 genes,8 taxa):Carica papayaevm.TU.supercontig_86.68
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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