Basic Information
Gene Model:Bol003152
Gene Family:Antiporter Super Family
Chromosome:Cun
Scaffold:Scaffold000363
Sequence:
 | 
Gene Structure
Nucleotide Length:3013 bp
Transcript Length:1644 bp
Protein Length:547 aa
Strand:-
Location:Scaffold000363: 227128 : 230140
Gene CDSs(14): 1-342 | 415-498 | 586-648 | 731-869 | 962-1063 | 1141-1241 | 1330-1396 | 1476-1522 | 1597-1791 | 1882-1928 | 2010-2069 | 2155-2252 | 2637-2755 | 2834-3013 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 214 226 NANot foundNot found
Segsegseg 257 270 NANot foundNot found
Segsegseg 520 534 NANot foundNot found
Segsegseg 148 160 NANot foundNot found
HMMPantherPTHR10110:SF2SODIUM/HYDROGEN EXCH 241 546 1.5e-178IPR018407Na+/H+ exchanger, isoforms 1-4, conserved region
HMMPantherPTHR10110SODIUM/HYDROGEN EXCH 241 546 1.5e-178IPR018422Cation/H+ exchanger, conserved region
HMMPfamPF00999Na_H_Exchanger 27 446 4.7e-52IPR006153Cation/H+ exchanger
HMMTigrTIGR00840b_cpa1: sodium/hydro 19 525 1.1e-19IPR004709Na+/H+ exchanger, subfamily
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0006814 Biological Process sodium ion transport
GO:0006885 Biological Process regulation of pH
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0015385 Molecular Function sodium:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q56XP40.0NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
spu:5787653e-61K03316TC.CPA1monovalent cation:H+ antiporter, CPA1 family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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