Basic Information
Gene Model:Bol003090
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000365
Sequence:
 | 
Gene Structure
Nucleotide Length:713 bp
Transcript Length:513 bp
Protein Length:170 aa
Strand:-
Location:Scaffold000365: 297558 : 298270
Gene CDSs(3): 1-90 | 196-321 | 417-713 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05479PsaN 34 170 1.4e-100IPR008796Photosystem I reaction centre subunit N
Segsegseg 67 88 NANot foundNot found
Segsegseg 50 64 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0009522 Cellular Component photosystem I
GO:0015979 Biological Process photosynthesis
GO:0042651 Cellular Component thylakoid membrane
Swiss-Prot
Best HitE_value Description
P491074e-87PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G640402e-68K02701psaNphotosystem I subunit PsaN
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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