Basic Information
Gene Model:Bol003058
Gene Family:ARIADNE Gene Families
Chromosome:Cun
Scaffold:Scaffold000365
Sequence:
 | 
Gene Structure
Nucleotide Length:4356 bp
Transcript Length:1971 bp
Protein Length:656 aa
Strand:-
Location:Scaffold000365: 77213 : 81568
Gene CDSs(3): 1-649 | 743-1630 | 3923-4356 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00647no description 398 465 0.74IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 315 382 5.2e-17IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685ARIADNE RING ZINC FI 200 655 3e-173Not foundNot found
HMMPantherPTHR11685:SF9ARI-LIKE RING ZINC F 200 655 3e-173Not foundNot found
Segsegseg 242 256 NANot foundNot found
Segsegseg 77 93 NANot foundNot found
HMMPfamPF01485IBR 315 382 4e-11IPR002867Zinc finger, C6HC-type
superfamilySSF57850RING/U-box 408 468 1.3e-07Not foundNot found
PatternScanPS01358ZF_RANBP2_1 629 648 NAIPR001876Zinc finger, RanBP2-type
Gene Ontology
GO TermGO TypeDescription
GO:0005622 Cellular Component intracellular
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9FFN91e-142ARI13_ARATH Probable E3 ubiquitin-protein ligase ARI13 OS=Arabidopsis thaliana GN=ARI13 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7414509e-50K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_17732Bol003057 Bol003058 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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