Basic Information
Gene Model:Bol003038
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000366
Sequence:
 | 
Gene Structure
Nucleotide Length:1518 bp
Transcript Length:1002 bp
Protein Length:333 aa
Strand:+
Location:Scaffold000366: 248572 : 250089
Gene CDSs(2): 1-547 | 1064-1518 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.1050.30no description 34 239 1.9e-50Not foundNot found
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 23 235 2.4e-119Not foundNot found
HMMPantherPTHR19957SYNTAXIN 23 235 2.4e-119Not foundNot found
Coilcoilcoiled-coil 35 63 NANot foundNot found
Segsegseg 302 326 NANot foundNot found
Segsegseg 280 297 NANot foundNot found
Segsegseg 5 24 NANot foundNot found
PatternScanPS00914SYNTAXIN 211 250 NAIPR006012Syntaxin/epimorphin, conserved site
ProfileScanPS50192T_SNARE 205 267 17.512IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 34 141 2.3e-30IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 210 272 2.3e-24IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 200 267 1.6e-19IPR000727Target SNARE coiled-coil region
HMMSmartSM00503no description 30 156 4.7e-44IPR006011Syntaxin, N-terminal
superfamilySSF47661t-snare proteins 32 240 5e-50IPR010989t-SNARE
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZSD41e-148SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q3E7R51e-143Q3E7R5_ARATH Putative uncharacterized protein At3g11820.2 OS=Arabidopsis thaliana GN=At3g11820 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G118201e-148K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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