Basic Information
Gene Model:Bol003032
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000366
Sequence:
 | 
Gene Structure
Nucleotide Length:2166 bp
Transcript Length:1392 bp
Protein Length:463 aa
Strand:+
Location:Scaffold000366: 135192 : 137357
Gene CDSs(2): 1-340 | 1115-2166 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.40.10no description 6 83 9.7e-24Not foundNot found
HMMPantherPTHR22904TPR REPEAT CONTAININ 9 82 2e-14Not foundNot found
HMMPantherPTHR22904:SF27CARBOXY TERMINUS OF 9 82 2e-14Not foundNot found
Segsegseg 157 161 NANot foundNot found
HMMPfamPF04564U-box 9 83 2.3e-35IPR003613U box domain
HMMSmartSM00504no description 13 76 1.2e-34IPR003613U box domain
superfamilySSF57850RING/U-box 6 81 1.5e-18Not foundNot found
superfamilySSF48371ARM repeat 49 432 8.1e-16IPR016024Armadillo-type fold
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9SF150.0PUB24_ARATH U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DGA60.0B9DGA6_ARATH AT3G11840 protein (Fragment) OS=Arabidopsis thaliana GN=AT3G11840 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cre:CHLREDRAFT_1204144e-09K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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