Basic Information
Gene Model:Bol002996
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000367
Sequence:
 | 
Gene Structure
Nucleotide Length:1272 bp
Transcript Length:1272 bp
Protein Length:423 aa
Strand:-
Location:Scaffold000367: 136856 : 138127
Gene CDSs(1): 1-1272 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF04564U-box 11 85 2e-20IPR003613U box domain
superfamilySSF57850RING/U-box 1 78 8e-11Not foundNot found
superfamilySSF48371ARM repeat 52 401 8.7e-25IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 102 402 3e-06IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 8 85 5.5e-22Not foundNot found
HMMSmartSM00504no description 15 78 3.1e-23IPR003613U box domain
HMMPantherPTHR22849WDSAM1 PROTEIN 12 92 3e-07Not foundNot found
Segsegseg 399 412 NANot foundNot found
Segsegseg 305 319 NANot foundNot found
Segsegseg 325 340 NANot foundNot found
Segsegseg 279 293 NANot foundNot found
Segsegseg 79 95 NANot foundNot found
Segsegseg 159 172 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9LSA61e-176PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1
TrEMBL
Best HitE_value Description
B1PBZ41e-147B1PBZ4_ARALP Putative uncharacterized protein OS=Arabidopsis lyrata subsp. petraea GN=AP9_G11.1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8305904e-06K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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