Basic Information
Gene Model:Bol002945
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000369
Sequence:
 | 
Gene Structure
Nucleotide Length:2133 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:+
Location:Scaffold000369: 253818 : 255950
Gene CDSs(7): 1-203 | 291-353 | 539-655 | 757-1015 | 1226-1384 | 1463-1614 | 1965-2133 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 237 340 3e-05Not foundNot found
superfamilySSF103481Multidrug resistance 47 155 0.00054Not foundNot found
Segsegseg 166 175 NANot foundNot found
HMMPfamPF00892DUF6 22 129 1.3e-08IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1636e-325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZUI80.0Q9ZUI8_ARATH T2K10.10 protein OS=Arabidopsis thaliana GN=At1g60050 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17693(3 genes,3 taxa):Arabidopsis thalianaAT1G60050.1
ORTHOMCL17693(3 genes,3 taxa):Brassica oleraceaBol002945
ORTHOMCL17693(3 genes,3 taxa):Brassica rapaBra027819
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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