Basic Information
Gene Model:Bol002931
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000369
Sequence:
 | 
Gene Structure
Nucleotide Length:867 bp
Transcript Length:867 bp
Protein Length:288 aa
Strand:+
Location:Scaffold000369: 51855 : 52721
Gene CDSs(1): 1-867 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03754DUF313 148 259 9.4e-64IPR005508Protein of unknown function DUF313
ProfileScanPS50863B3 191 287 11.561IPR003340Transcriptional factor B3
Segsegseg 98 120 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LSF72e-75Y3518_ARATH B3 domain-containing protein At3g25182 OS=Arabidopsis thaliana GN=At3g25182 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SJ983e-25Q9SJ98_ARATH Putative uncharacterized protein At2g24670 OS=Arabidopsis thaliana GN=At2g24670 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15617(4 genes,3 taxa):Arabidopsis thalianaAT3G24850.1
ORTHOMCL15617(4 genes,3 taxa):Arabidopsis thalianaAT5G24050.1
ORTHOMCL15617(4 genes,3 taxa):Brassica oleraceaBol002931
ORTHOMCL15617(4 genes,3 taxa):Brassica rapaBra027159
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo