Basic Information
Gene Model:Bol002918
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000370
Sequence:
 | 
Gene Structure
Nucleotide Length:3626 bp
Transcript Length:2595 bp
Protein Length:864 aa
Strand:+
Location:Scaffold000370: 254266 : 257891
Gene CDSs(12): 1-127 | 379-494 | 590-688 | 777-833 | 902-1057 | 1118-1202 | 1298-1553 | 1628-1750 | 1835-2046 | 2113-3158 | 3231-3421 | 3500-3626 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50962IAA_ARF 756 838 26.034IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 156 258 13.155IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 143 272 7.5e-42Not foundNot found
HMMPfamPF02309AUX_IAA 656 847 0.00044IPR003311AUX/IAA protein
HMMPfamPF06507Auxin_resp 282 365 1.4e-54IPR010525Auxin response factor
HMMPfamPF02362B3 155 260 6.4e-35IPR003340Transcriptional factor B3
Segsegseg 280 287 NANot foundNot found
Segsegseg 695 700 NANot foundNot found
Segsegseg 720 728 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P930240.0ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3
TrEMBL
Best HitE_value Description
B9R8650.0B9R865_RICCO Auxin response factor, putative OS=Ricinus communis GN=RCOM_1597120 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G198500.0K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2826(13 genes,7 taxa):Arabidopsis thalianaAT1G19850.1
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol002918
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol023586
ORTHOMCL2826(13 genes,7 taxa):Brassica oleraceaBol026901
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra012190
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra016492
ORTHOMCL2826(13 genes,7 taxa):Brassica rapaBra025775
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-01
ORTHOMCL2826(13 genes,7 taxa):Oryza sativaOs04t0664400-02
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0002s02630.1
ORTHOMCL2826(13 genes,7 taxa):Populus trichocarpaPOPTR_0005s25800.1
ORTHOMCL2826(13 genes,7 taxa):Sorghum bicolorSb06g031900.1
ORTHOMCL2826(13 genes,7 taxa):Carica papayaevm.TU.supercontig_26.24
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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