Basic Information
Gene Model:Bol002894
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000370
Sequence:
 | 
Gene Structure
Nucleotide Length:4334 bp
Transcript Length:2697 bp
Protein Length:898 aa
Strand:+
Location:Scaffold000370: 33154 : 37487
Gene CDSs(11): 1-82 | 268-613 | 1132-1245 | 1333-1598 | 1672-1789 | 1856-2372 | 2742-2842 | 2925-3167 | 3239-3353 | 3472-3682 | 3751-4334 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 239 737 1.9e-66IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 149 895 1e-298IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 149 895 1e-298Not foundNot found
superfamilySSF54897Protease propeptides 148 227 6e-08IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 209 746 3.7e-72IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 708 720 NANot foundNot found
PatternScanPS00430TONB_DEPENDENT_REC_1 1 103 NAIPR010916TonB box, conserved site
PatternScanPS00137SUBTILASE_HIS 336 346 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 670 680 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 489 592 1.2e-12IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 631 731 2.7e-13IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 151 227 2.2e-18IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
Q395471e-134CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LNU00.0Q9LNU0_ARATH T20H2.7 protein OS=Arabidopsis thaliana GN=T20H2.7 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20150.1
ORTHOMCL1253(18 genes,8 taxa):Arabidopsis thalianaAT1G20160.1
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol002894
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026458
ORTHOMCL1253(18 genes,8 taxa):Brassica oleraceaBol026930
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra012217
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra025798
ORTHOMCL1253(18 genes,8 taxa):Brassica rapaBra034327
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01009968001
ORTHOMCL1253(18 genes,8 taxa):Vitis viniferaGSVIVT01027368001
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs01t0278950-00
ORTHOMCL1253(18 genes,8 taxa):Oryza sativaOs09t0482660-01
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0002s02010.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0003s18830.1
ORTHOMCL1253(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s26460.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb02g009600.1
ORTHOMCL1253(18 genes,8 taxa):Sorghum bicolorSb03g011300.1
ORTHOMCL1253(18 genes,8 taxa):Carica papayaevm.TU.supercontig_26.289
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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