Basic Information
Gene Model:Bol002851
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:Cun
Scaffold:Scaffold000372
Sequence:
 | 
Gene Structure
Nucleotide Length:1095 bp
Transcript Length:543 bp
Protein Length:180 aa
Strand:-
Location:Scaffold000372: 103612 : 104706
Gene CDSs(4): 1-50 | 345-490 | 645-765 | 870-1095 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.90.190.10no description 22 171 5.8e-46Not foundNot found
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 24 164 38.551IPR020422Dual specificity phosphatase, subgroup, catalytic domain
ProfileScanPS50056TYR_PHOSPHATASE_2 67 147 13.622IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
HMMSmartSM00195no description 24 162 1.6e-42IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMSmartSM00404no description 48 168 0.0026IPR003595Protein-tyrosine phosphatase, catalytic
superfamilySSF52799(Phosphotyrosine pro 22 163 5.3e-47Not foundNot found
HMMPantherPTHR10159:SF33SKRP-RELATED DUAL SP 23 168 5.4e-102Not foundNot found
HMMPantherPTHR10159DUAL SPECIFICITY PRO 23 168 5.4e-102Not foundNot found
HMMPfamPF00782DSPc 24 162 5.7e-41IPR000340Dual specificity phosphatase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q8WTR21e-25DUS19_HUMAN Dual specificity protein phosphatase 19 OS=Homo sapiens GN=DUSP19 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M8K71e-81Q9M8K7_ARATH Putative dual-specificity protein phosphatase OS=Arabidopsis thaliana GN=At3g06110/F28L1_5 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_09127906e-48K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18338(3 genes,3 taxa):Arabidopsis thalianaAT3G06110.2
ORTHOMCL18338(3 genes,3 taxa):Brassica oleraceaBol002851
ORTHOMCL18338(3 genes,3 taxa):Brassica rapaBra020776
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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