Basic Information
Gene Model:Bol002676
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:Cun
Scaffold:Scaffold000379
Sequence:
 | 
Gene Structure
Nucleotide Length:1082 bp
Transcript Length:705 bp
Protein Length:234 aa
Strand:-
Location:Scaffold000379: 148759 : 149840
Gene CDSs(6): 1-62 | 141-245 | 327-412 | 496-646 | 714-964 | 1033-1082 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.250.10no description 34 174 1e-15IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 44 186 1.8e-18IPR001763Rhodanese-like
Segsegseg 149 163 NANot foundNot found
HMMSmartSM00450no description 53 183 2.9e-15IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 63 186 14.171IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O485291e-123O48529_ARATH Rhodanese-like family protein OS=Arabidopsis thaliana GN=At2g42220 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9655(8 genes,8 taxa):Arabidopsis thalianaAT2G42220.1
ORTHOMCL9655(8 genes,8 taxa):Brassica oleraceaBol002676
ORTHOMCL9655(8 genes,8 taxa):Brassica rapaBra016889
ORTHOMCL9655(8 genes,8 taxa):Vitis viniferaGSVIVT01033526001
ORTHOMCL9655(8 genes,8 taxa):Oryza sativaOs09t0279400-01
ORTHOMCL9655(8 genes,8 taxa):Populus trichocarpaPOPTR_0006s05810.1
ORTHOMCL9655(8 genes,8 taxa):Sorghum bicolorSb02g018640.1
ORTHOMCL9655(8 genes,8 taxa):Carica papayaevm.TU.supercontig_85.90
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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