Basic Information
Gene Model:Bol002494
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000387
Sequence:
 | 
Gene Structure
Nucleotide Length:2042 bp
Transcript Length:1056 bp
Protein Length:351 aa
Strand:+
Location:Scaffold000387: 206015 : 208056
Gene CDSs(5): 1-252 | 962-1252 | 1351-1468 | 1574-1797 | 1872-2042 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 17 28 NANot foundNot found
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 39 351 9.4e-134Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 39 351 9.4e-134IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 170 328 1.4e-36IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 42 350 4.1e-58IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 60 351 1.5e-59IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 50 347 5.1e-55IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9M9W90.0P2C34_ARATH Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9DHP91e-157B9DHP9_ARATH AT3G05640 protein (Fragment) OS=Arabidopsis thaliana GN=AT3G05640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_093752e-34K07376PRKGprotein kinase, cGMP-dependent
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18331(3 genes,3 taxa):Arabidopsis thalianaAT3G05640.1
ORTHOMCL18331(3 genes,3 taxa):Brassica oleraceaBol002494
ORTHOMCL18331(3 genes,3 taxa):Brassica rapaBra040530
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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