Basic Information
Gene Model:Bol002491
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000387
Sequence:
 | 
Gene Structure
Nucleotide Length:2149 bp
Transcript Length:957 bp
Protein Length:318 aa
Strand:-
Location:Scaffold000387: 180133 : 182281
Gene CDSs(8): 1-108 | 195-275 | 365-430 | 527-604 | 685-756 | 849-938 | 1025-1304 | 1968-2149 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19957:SF5SYNTAXIN 16 3 252 9e-110Not foundNot found
HMMPantherPTHR19957SYNTAXIN 3 252 9e-110Not foundNot found
Coilcoilcoiled-coil 117 138 NANot foundNot found
HMMPfamPF00804Syntaxin 70 166 1.1e-20IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 227 289 5.5e-21IPR000727Target SNARE coiled-coil region
PatternScanPS00914SYNTAXIN 228 267 NAIPR006012Syntaxin/epimorphin, conserved site
superfamilySSF47661t-snare proteins 68 277 6.8e-38IPR010989t-SNARE
Gene3DG3DSA:1.20.1050.30no description 68 277 1.2e-40Not foundNot found
HMMSmartSM00503no description 65 180 2.8e-23IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 217 284 2.1e-12IPR000727Target SNARE coiled-coil region
ProfileScanPS50192T_SNARE 222 284 16.789IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SUJ11e-165SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2
TrEMBL
Best HitE_value Description
B7X6S71e-137B7X6S7_TOBAC Syntaxin OS=Nicotiana tabacum GN=NtSYP41 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G057101e-164K08489STX16syntaxin 16
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4813(11 genes,8 taxa):Arabidopsis thalianaAT3G05710.2
ORTHOMCL4813(11 genes,8 taxa):Brassica oleraceaBol000417
ORTHOMCL4813(11 genes,8 taxa):Brassica oleraceaBol002491
ORTHOMCL4813(11 genes,8 taxa):Brassica rapaBra039417
ORTHOMCL4813(11 genes,8 taxa):Brassica rapaBra040527
ORTHOMCL4813(11 genes,8 taxa):Vitis viniferaGSVIVT01031201001
ORTHOMCL4813(11 genes,8 taxa):Oryza sativaOs06t0116300-01
ORTHOMCL4813(11 genes,8 taxa):Populus trichocarpaPOPTR_0005s02070.1
ORTHOMCL4813(11 genes,8 taxa):Populus trichocarpaPOPTR_0013s01240.1
ORTHOMCL4813(11 genes,8 taxa):Sorghum bicolorSb03g002230.1
ORTHOMCL4813(11 genes,8 taxa):Carica papayaevm.TU.supercontig_48.128
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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