Basic Information
Gene Model:Bol002481
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000387
Sequence:
 | 
Gene Structure
Nucleotide Length:261 bp
Transcript Length:168 bp
Protein Length:55 aa
Strand:+
Location:Scaffold000387: 103453 : 103713
Gene CDSs(2): 1-81 | 175-261 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 54 1.8e-22IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 4 54 1e-21IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9ZNS65e-21RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1
TrEMBL
Best HitE_value Description
Q67Z659e-20Q67Z65_ARATH Low temperature and salt responsive protein LTI6B OS=Arabidopsis thaliana GN=At3g05890 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23355(2 genes,2 taxa):Brassica oleraceaBol002481
ORTHOMCL23355(2 genes,2 taxa):Brassica rapaBra040247
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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