Basic Information
Gene Model:Bol002462
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000387
Sequence:
 | 
Gene Structure
Nucleotide Length:1131 bp
Transcript Length:1056 bp
Protein Length:351 aa
Strand:-
Location:Scaffold000387: 17980 : 19110
Gene CDSs(2): 1-138 | 214-1131 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 91 99 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 71 307 2.8e-40IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 37 347 3.7e-99Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 37 347 3.7e-99IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 55 343 1.5e-54IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 34 350 9.1e-55IPR001932Protein phosphatase 2C-related
Segsegseg 15 27 NANot foundNot found
Segsegseg 29 40 NANot foundNot found
Segsegseg 89 102 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 70 347 1.5e-52IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q7XJ531e-179P2C35_ARATH Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RSV01e-152B9RSV0_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0678830 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G200501e-112K04345PKAprotein kinase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9744(8 genes,5 taxa):Arabidopsis thalianaAT3G06270.1
ORTHOMCL9744(8 genes,5 taxa):Brassica oleraceaBol002462
ORTHOMCL9744(8 genes,5 taxa):Brassica oleraceaBol034062
ORTHOMCL9744(8 genes,5 taxa):Brassica rapaBra001189
ORTHOMCL9744(8 genes,5 taxa):Brassica rapaBra040230
ORTHOMCL9744(8 genes,5 taxa):Populus trichocarpaPOPTR_0008s20320.1
ORTHOMCL9744(8 genes,5 taxa):Populus trichocarpaPOPTR_0010s02910.1
ORTHOMCL9744(8 genes,5 taxa):Carica papayaevm.TU.supercontig_16.69
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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