Basic Information
Gene Model:Bol002443
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000388
Sequence:
 | 
Gene Structure
Nucleotide Length:5080 bp
Transcript Length:2511 bp
Protein Length:836 aa
Strand:-
Location:Scaffold000388: 168197 : 173276
Gene CDSs(19): 1-474 | 601-880 | 1001-1065 | 1157-1216 | 1319-1537 | 1732-1816 | 2007-2176 | 2383-2496 | 2580-2679 | 3034-3099 | 3218-3281 | 3369-3442 | 3623-3912 | 3999-4048 | 4181-4250 | 4356-4427 | 4521-4595 | 4764-4838 | 4973-5080 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52799(Phosphotyrosine pro 195 655 2e-118Not foundNot found
superfamilySSF50729PH domain-like 48 176 9.2e-18Not foundNot found
HMMSmartSM00568no description 44 111 1.5e-08IPR004182GRAM
HMMPantherPTHR10807:SF8MYOTUBULARIN-RELATED 57 691 0Not foundNot found
HMMPantherPTHR10807MYOTUBULARIN 57 691 0Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 440 450 NAIPR016130Protein-tyrosine phosphatase, active site
Segsegseg 5 18 NANot foundNot found
Segsegseg 521 532 NANot foundNot found
Segsegseg 632 644 NANot foundNot found
Segsegseg 673 687 NANot foundNot found
Segsegseg 696 710 NANot foundNot found
Coilcoilcoiled-coil 667 709 NANot foundNot found
ProfileScanPS51339PPASE_MYOTUBULARIN 201 649 107.407IPR017906Myotubularin phosphatase
HMMPfamPF06602Myotub-related 230 352 7.1e-66IPR010569Myotubularin-related
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
A6QLT27e-89MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q0WP530.0Q0WP53_ARATH Myotubularin-like protein OS=Arabidopsis thaliana GN=At5g04540 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
bta:5368101e-88K01112E3.1.3.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1777(16 genes,8 taxa):Arabidopsis thalianaAT3G10550.1
ORTHOMCL1777(16 genes,8 taxa):Arabidopsis thalianaAT5G04540.1
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol002443
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol023143
ORTHOMCL1777(16 genes,8 taxa):Brassica oleraceaBol024446
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra009444
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra028785
ORTHOMCL1777(16 genes,8 taxa):Brassica rapaBra034126
ORTHOMCL1777(16 genes,8 taxa):Vitis viniferaGSVIVT01034690001
ORTHOMCL1777(16 genes,8 taxa):Oryza sativaOs08t0556700-01
ORTHOMCL1777(16 genes,8 taxa):Populus trichocarpaPOPTR_0008s02720.1
ORTHOMCL1777(16 genes,8 taxa):Populus trichocarpaPOPTR_0010s23980.1
ORTHOMCL1777(16 genes,8 taxa):Sorghum bicolorSb07g024440.1
ORTHOMCL1777(16 genes,8 taxa):Sorghum bicolorSb07g024450.1
ORTHOMCL1777(16 genes,8 taxa):Carica papayaevm.TU.supercontig_128.53
ORTHOMCL1777(16 genes,8 taxa):Carica papayaevm.TU.supercontig_942.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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